miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|144926753|gb|DC288158.1|DC288158 GGGGGGCTGACCCAAACCAGAGAGATGGGCTGGGCAATACTCCCTTACACTTGGCTGCCTGCACGAACCACGTTCCTGTC
ATCACCACGCTGCTGCGCGGAGGGGCCAGAGTTGATGCCTTGGATCGAGCTGGCAGAACTCCACTGCACCTCGCTAAATC
AAAGCTGAATATCCTGCAGGAAGGATTCTCCCACAGCCTGGAGGCTGTACGCCTTGAAGTGAAACAGATTATCCAGATGT
TGCGGGAATACCTGGACCGTCTGGGGAGGCATGAGCAGAAGGAACAGCTGGATGACCTCTGCTCCAGGCTACAGATGACT
AGCACAAAGGAGCAGGTGGATGAGGTTACAGACCTCCTGGCCAGCTTCACATCGCTCAGCCTGCAGATGCAGAAGATGGA
CAACAGGTAATGGGCTGCCAAATCATCTTCCTGAAGCAGCAGAAGAAACCTTAGAGAGGAAAGGAAGCTGAAGTTTGCTT
CTCAGATCACTGACTAAACATTGCTGCCAGCAGCCATTCCTGCCCAGACTGACTCTCCAGTGGTGCTCAGACTGTTCCTG
GGGAAGGCAGCAGGCTTTTGCACAACAAAGGCAACAGACAAGAATGCTGCAGCTGTGACTTTGGGGNTAAAAGAGCTGCT
CTACGTTTTACCAGATGGGCTGGTGATGAACAGGGTACCCTTTTCCAGANATAATTTTGCCTTCNCCTAAATACGTCANA
TTTNGACTANTGGCCCTCNGCAGCTGGGCCAGNATNCCAANAAATGCTTGGAAACAGGGACCCTTTTTGCCCCCCCCCAA
NCTGGTTCCNTTNGCNTGAAGGGAAAAACCNNGAA




Most similar to sp|Q566C8|ANR54_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q566C8|ANR54_RAT Ankyrin repeat_field domain-containing protein 54
          Length = 299

 Score =  243 bits (620), Expect = 1e-63
 Identities = 122/133 (91%), Positives = 128/133 (96%)
 Frame = +3

Query: 3   GADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQE 182
           GADPNQ+DGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQE
Sbjct: 165 GADPNQQDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQE 224

Query: 183 GFSHSLEAVRLEVKQIIQMLREYLDRLGRHEQKEQLDDLCSRLQMTSTKEQVDEVTDLLA 362
           G S  LEAVRLEVKQII MLREYL+RLGRHEQ+E+LDDLC+RLQMTSTKEQVDEVTDLLA
Sbjct: 225 GHSQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLA 284

Query: 363 SFTSLSLQMQKMD 401
           SFTSLSLQMQ M+
Sbjct: 285 SFTSLSLQMQSME 297